After recovery of the supernatants, SDS was added (0.1% wt/v). The flagellum pellets were obtained by centrifugation at 100,000 g for 2 h at 4°C. The supernatants were removed, and the PF-01367338 mw flagellum filaments were resuspended in 50 μl of HEPES buffer (10 mM HEPES, 10 μM EDTA pH 8.0, 200 μM CaCl2). Before the flagella were detached from the N16961 and N169-dtatABC cells,

we calculated the wet weight of each cell type. To quantify the extracted flagellum proteins, the flagellum extracts from N16961 and N169-dtatABC cells were equated by the wet weight of the collected cells. The concentration of the flagellum extraction was quantified with the BSA standard curve by Bradford assay. Purity of the flagellum preparations was assessed by denaturing

SDS-PAGE. Flagellum extraction and quantification were performed in triplicate. see more Biofilm formation Selleck Screening Library assay In a quantitative biofilm formation assay, both primary attachment and accumulation in multilayered cell clusters, which together lead to biofilm formation, can be measured by altering the incubation time of the bacteria. Biofilm assays were done according to the protocol of Loo et al. [27] with minor modifications. Briefly, overnight cultures of N16961 and dtat-N169 cells were diluted 1:100 into fresh LB medium and grown at 37°C to OD600 0.5, both under aerobic and anaerobic conditions. The cultures were then again diluted 1:100 into fresh LB, and 200 μl of the cell suspension was placed into separate wells of a 96-well (flat bottom) cell culture plate (Costar 3595, Corning). Wells containing fresh growth medium were used as negative controls. Plates were incubated at 37°C under both aerobic and anaerobic conditions for 6 to 72 h. The artificial anaerobic condition was generated by an anaerobic jar (Oxoid) where the plates were incubated. The vacuum extractor was used to extract the air in the anaerobic

jar to lower atmospheric pressure (-10 millimeters of mercury), and then H2 and CO2 were inflated to normal atmospheric pressure. Before biofilm quantification, growth was assessed by Afatinib in vitro measuring the absorbance of cultures in the wells at 595 nm using GENios (TECAN). For this purpose, media and unattached bacterial cells were decanted from the wells after 5 min of agitation, and the remaining planktonic or loosely bound cells were removed by gentle rinsing with 200 μl of sterile distilled water. The plates were then blotted on paper towels and air-dried. The adhering bacteria were stained with 225 μl of 0.1% crystal violet for 15 min at room temperature. After two rinses, each with 250 μl of water, the bound dye was extracted from the stained cells using 250 μl of 99% ethanol. The plates were then agitated for 15 min to fully release the dye. Biofilm formation was quantified by measuring the absorbance of the rinsed solution at 595 nm with GENios. The data were obtained in triplicate tests, and seven wells were measured for each strain (N16961 and N169-dtatABC) and in each test.